PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zosma5g02450.1
Common NameZOSMA_5G02450
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Zosteraceae; Zostera
Family bHLH
Protein Properties Length: 470aa    MW: 51137.1 Da    PI: 6.2466
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zosma5g02450.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.17.4e-09319366455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Zosma5g02450.1 319 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 366
                     8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.13E-11313370No hitNo description
SuperFamilySSF474594.58E-17313384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663315365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-17315383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.1E-6319366IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10321371IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MENDSFFANS GHLQSVSEIN CAPSSQQLLQ PCFLNLNWDL SMDQRSQFGS DLGSMVSSPS  60
THTSPANVAL RENVVLGEFV GKMRSICSSD EISPQSHLFL GSGCGGGGGN NCNTTTTTLN  120
SSPKLNLSIH NNQPISGNPS MPPTNHLSPF AMDPGFTERV ARFSSFNEEN YGGSQMGVSD  180
ISIQDRSQLS IKTLSEFGSG TTNDGQFGCG VDDPLIISGN RGKSRKFKGP LRGKTKDTPL  240
SSSIRKSTPK VVATGENFNM KRTKSSESTE TIKDDLKPKV EFTSSTNSGD GDQKPTTQPE  300
PPKQDFIHVR ARRGQATDSH SLAERVRREK ISERMKFLQD LVPGCNKVTG KAVMLDEIIN  360
YVQSLQRQVE FMSMKLATVN PRLDFNIENL PHKDVPQLGL SCETTSCPVF PFTPQNFHFQ  420
SILTSGIENS STMPSFDGVF GTDFPSQVGG AFWDDDLQTV VQMGFTPNQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907240.11e-116PREDICTED: transcription factor bHLH62
TrEMBLA0A0K9NUR70.0A0A0K9NUR7_Z
STRINGVIT_05s0029g00390.t011e-98(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP91938137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23690.12e-57bHLH family protein